iPfam 1.0 (June 2013)
The iPfam database is a catalog of protein family interactions, including domain and ligand interactions, calculated from known structures. More...
We take all known structures in the PDB, identify the protein domain(s) that are present in each structure and look for bonds between each domain and any other domains and/or small chemical ligands found in the structure. The bonds are automatically estimated based on both geometric and chemical properties of the two atoms involved.
You can find data in iPfam in various ways...
- VIEW A FAMILY ENTRY
- VIEW A LIGAND ENTRY
- VIEW A PDB ENTRY
- SEQUENCE SEARCH
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Or view the help pages for more information
Finn RD, Miller BL, Clements J, Bateman A
Nucleic Acids Research 2013; doi: 10.1093/nar/gkt1210